Molecular Epidemiology of Viral Gastroenteritis in Children under 5 Years: A Cross-sectional Study in Northeast Iran

Authors

  • Farzaneh Baratian
  • Homa Jajarmi Khayat
  • Hamid Reza Shoraka
  • Nima Firouzeh
  • Alireza Abaspour
  • Mona Fani

Keywords:

Viral infectionViral infection, Diarrhea, Acute diarrheal illness, faecal oral route, borne diseases, water contamination, hand hygiene, pipeline contamination, acute kidney failure.

Abstract

OBJECTIVE: To study the prevalence of the most important enteric viral infections causing acute diarrhea in children under five years of age in Northeast Iran.

METHODOLOGY: This cross-sectional study investigated the prevalence of viral infection using Real-Time PCR in children under five years of age with acute diarrhoea referred to Imam Reza Hospital, the main referral hospital in northeastern Iran, during early September to late December of 2024. Sixty-five stool samples were collected from patients who had symptoms of fever and diarrhea and no history of rotavirus vaccination. SPSS software version 26 was used to analyze the data.

RESULTS: A significant majority (60%) tested positive for Rotavirus. This highlights Rotavirus as a primary cause of gastroenteritis in this group. Adenovirus was detected in 10.8% of the samples, while Astrovirus and Sapovirus combined accounted for 13.8% of the positive cases. The highest prevalence of co-infection was reported for Rota/Astro/Sapo (12.3%), followed by 9.2% for Rota/Adeno, 3.1% for Adeno/Astro/Sapo, and 3.1% for Rota/Adeno/Astro/Sapo, respectively.

CONCLUSION: The results of our study show a significant prevalence of gastroenteritis infections, especially Rotavirus infection, among children, highlighting the importance of surveillance and vaccination.

References

1. Hartman S, Brown E, Loomis E, Russell HA. Gastroenteritis in children. American Family Physician. 2019; 99(3): 159-65.

2. Omatola CA, Olaniran AO. Rotaviruses: From pathogenesis to disease control - A critical review. Viruses. 2022; 14(5): 875.

3. López S, Arias CF. Rotavirus biology. Human Virology in Latin America: From Biology to Control: Springer; 2017; 19-42.

4. Nurdin JA, Kotaki T, Kawagishi T, Sato S, Yamasaki M, Nouda R et al. N-glycosylation of rotavirus NSP4 protein affects viral replication and pathogenesis. J Virology. 2023; 97(1): e01861-22.

5. LeClair CE, McConnell KA. Rotavirus. StatPearls [Internet]: StatPearls Publishing; 2023.

6. Stanifer M, Boulant S. The origin of diarrhea in rotavirus infection. Science. 2020; 370(6519): 909-910.

7. Rossouw E, Brauer M, Meyer P, du Plessis NM, Avenant T, Mans J. Virus etiology, diversity and clinical characteristics in South African children hospitalized with gastroenteritis. Viruses. 2021; 13(2): 215.

8. Florez ID, Nino-Serna LF, Beltran-Arroyave CP. Acute infectious diarrhea and gastroenteritis in children. Current Infect Dis Reports. 2020; 22(2): 4.

9. Ardura-Garcia C, Kreis C, Rakic M, Jaboyedoff M, Mallet MC, Low N et al. Rotavirus disease and health care utilization among children under 5 years of age in highly developed countries: A systematic review and meta-analysis. Vaccine. 2021; 39(22): 2917-28.

10. Pang X. Gastroenteritis viruses other than rotaviruses. Mol Med Microbiol. 2024; 2339-54.

11. do Nascimento LG, Fialho AM, de Andrade JdSR, de Assis RMS, Fumian TM. Human enteric adenovirus F40/41 as a major cause of acute gastroenteritis in children in Brazil, 2018 to 2020. Scientific Reports. 2022; 12(1): 11220.

12. Khales P, Razizadeh MH, Ghorbani S, Moattari A, Sarvari J, Saadati H et al. Human adenoviruses in children with gastroenteritis: a systematic review and meta-analysis. BMC Infect Dis. 2024; 24(1): 478.

13. Iturriza-Gómara M, Cunliffe NA. Viral gastroenteritis. Hunter's Tropical Medicine and Emerging Infectious Diseases: Elsevier; 2020; 289-307.

14. Cunliffe TG, Bates EA, Parker AL. Hitting the target but missing the point: recent progress towards adenovirus-based precision virotherapies. Cancers. 2020; 12(11): 3327.

15. Mehdipour Dalivand M, Ali M, Yee R. Prevalence and Clinical Manifestation of Astrovirus Gastroenteritis in Adults: A Seven-Year Study in Washington DC, USA. Viruses. 2025; 17(5): 730.

16. Manglic S, Mavi AK, Kumar N, Singh DK, Kumar U, Nayak A et al. Astroviruses: Overview and Emerging Disease. Emerg Human Viral Dis. Vol. II: Encephalitic, Gastroenteric, and Immunodeficiency Viral Infections. 2024: 347-65.

17. Piryaei M, Bagheri S, Riahi A, Razmyar J. Astroviruses: Pathogenesis and Diagnosis: A Review. J Poultry Sci Avian Dis. 2023; 1(3): 1-17.

18. Yadav M, Sonkar S, Koner BC. Sapovirus: A Prevalent Culprit for Childhood Gastroenteritis. Emerging Human Viral Dis. Vol. II: Encephalitic, Gastroenteric, and Immunodeficiency Viral Infections: Springer; 2024; 429-45.

19. Euller-Nicolas G, Le Mennec C, Schaeffer J, Zeng X-L, Ettayebi K, Atmar RL et al. Human sapovirus replication in human intestinal enteroids. J Virology. 2023; 97(4): e00383-23.

20. Becker-Dreps S, Bucardo F, Vinjé J. Sapovirus: an important cause of acute gastroenteritis in children. Lancet Child Adolesc Health. 2019; 3(11): 758.

21. Mojahed N, Mohammadkhani MA, Pourasgari M, Rad GG-J, Mohamadkhani A. Viral gastroenteritis prevalence in Iranian pediatric population: a systematic review. Avicenna J Clin Microbiol Infect. 2022; 9(3): 124-34.

22. Monavari SHR, Hadifar S, Mostafaei S, Miri A, Keshavarz M, Babaei F et al. Epidemiology of rotavirus in the Iranian children: A systematic review and meta-analysis. J Glob Infect Dis. 2017; 9(2): 66-72.

23. Hamkar R, Yahyapour Y, Noroozi M, Nourijelyani K, Jalilvand S, Adibi L et al. Prevalence of rotavirus, adenovirus, and astrovirus infections among patients with acute gastroenteritis in Northern Iran. Iran J Public Health. 2010; 39(2): 45.

24. Jadali F, Karimi AE, Falah F, Zahraei M, Esteghamati A, Navidinia M et al. A survey on rotavirus associated diarrhea in 5 main cities of Iran. 2012.

25. Kumar CG, Giri S, Chawla-Sarkar M, Gopalkrishna V, Chitambar SD, Ray P et al. Epidemiology of rotavirus diarrhea among children less than 5 years hospitalized with acute gastroenteritis prior to rotavirus vaccine introduction in India. Vaccine. 2020; 38(51): 8154-60.

26. Mustafa K, Faryal R, Alam MM, Rana S, Umair M, Shah TA. Epidemiology and clinical features of Rotavirus infection among children in Rawalpindi, Pakistan. PLoS One. 2025; 20(5): e0324037.

27. Nasab SDM, Zali F, Kaghazian H, Aghasadeghi MR, Mardani R, Gachkar L et al. Prevalence of astrovirus, adenovirus, and sapovirus infections among Iranian children with acute gastroenteritis. Gastroenterology and Hepatology From Bed to Bench. 2020; 13(Suppl1): S122-S127.

28. Sanaei Dashti A, Ghahremani P, Hashempoor T, Karimi A. Molecular epidemiology of enteric adenovirus gastroenteritis in under?five?year?old children in Iran. Gastroenterol Res Practice. 2016; 2016(1): 2045697.

29. Shoja Z, Jalilvand S, Mollaei-Kandelous Y, Validi M. Epidemiology of viral gastroenteritis in Iran. Pediatr Iinfect Dis J. 2014; 33(2): 218-20.

Downloads

Published

30-06-2026

How to Cite

1.
Baratian F, Jajarmi Khayat H, Shoraka HR, Firouzeh N, Abaspour A, Fani M. Molecular Epidemiology of Viral Gastroenteritis in Children under 5 Years: A Cross-sectional Study in Northeast Iran. J Liaq Uni Med Health Sci [Internet]. 2026 Jun. 30 [cited 2026 Jul. 1];25(03):167-71. Available from: http://121.52.154.205/index.php/jlumhs/article/view/1758

Similar Articles

<< < 5 6 7 8 9 10 11 12 13 > >> 

You may also start an advanced similarity search for this article.